General Information of the Compound
Compound ID
CP0517983
Compound Name
N-[4-[2-[(2S,3S,5S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]-1,3-dithian-2-yl]phenyl]-N'-hydroxyoctanediamide
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Structure
Formula
C34H52N4O7S2Si
Molecular Weight
721.031
Canonical SMILES
Cc1cn([C@@H]2C[C@@H]([C@@H](CO[Si](C)(C)C(C)(C)C)O2)C2(SCCCS2)c2ccc(NC(=O)CCCCCCC(=O)NO)cc2)c(=O)[nH]c1=O
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InChI
InChI=1S/C34H52N4O7S2Si/c1-23-21-38(32(42)36-31(23)41)30-20-26(27(45-30)22-44-48(5,6)33(2,3)4)34(46-18-11-19-47-34)24-14-16-25(17-15-24)35-28(39)12-9-7-8-10-13-29(40)37-43/h14-17,21,26-27,30,43H,7-13,18-20,22H2,1-6H3,(H,35,39)(H,37,40)(H,36,41,42)/t26-,27+,30-/m0/s1
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InChIKey
OBLYOUHZDXWOHW-DURBRWELSA-N
Physicochemical Property
logP
6.27812
Rotatable Bonds
14
Heavy Atom Count
48
Polar Areas
151.75
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
10
Complexity
48

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 145970020
ChEMBL ID
CHEMBL4228293
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 1100 nM
   TI
   LI
   LO
   TS
Protein ID: PT03064, Histone deacetylase 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 44 nM
   TI
   LI
   LO
   TS
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000007 HT-29 Homo sapiens (Human)  1
1
GI50 = 7079.46 nM
   TI
   LI
   LO
   TS
CL000048 PC-3 Homo sapiens (Human)  1
1
GI50 = 4570.88 nM
   TI
   LI
   LO
   TS
CL000067 HCT 116 Homo sapiens (Human)  2
1
GI50 = 4168.69 nM
   TI
   LI
   LO
   TS
2
GI50 = 4170 nM
   TI
   LI
   LO
   TS
CL000083 MCF-7 Homo sapiens (Human)  1
1
GI50 = 3890.45 nM
   TI
   LI
   LO
   TS
CL000084 SK-OV-3 Homo sapiens (Human)  1
1
GI50 = 12882.5 nM
   TI
   LI
   LO
   TS
CL000111 MDA-MB-231 Homo sapiens (Human)  1
1
GI50 = 3090.3 nM
   TI
   LI
   LO
   TS
CL000117 SF539 Homo sapiens (Human)  1
1
GI50 = 4570.88 nM
   TI
   LI
   LO
   TS
CL000119 DU145 Homo sapiens (Human)  2
1
GI50 = 3980 nM
   TI
   LI
   LO
   TS
2
GI50 = 3981.07 nM
   TI
   LI
   LO
   TS
CL000145 NCI-H460 Homo sapiens (Human)  1
1
GI50 = 4677.35 nM
   TI
   LI
   LO
   TS
CL000365 NCI-H226 Homo sapiens (Human)  1
1
GI50 = 10232.93 nM
   TI
   LI
   LO
   TS
CL000413 MKN45 Homo sapiens (Human)  1
1
GI50 = 10000 nM
   TI
   LI
   LO
   TS
CL000591 HCT 15 Homo sapiens (Human)  1
1
GI50 = 15488.17 nM
   TI
   LI
   LO
   TS
CL000623 OVCAR-8 Homo sapiens (Human)  1
1
GI50 = 4265.8 nM
   TI
   LI
   LO
   TS
CL000652 KM12 Homo sapiens (Human)  1
1
GI50 = 6760.83 nM
   TI
   LI
   LO
   TS
CL000708 OVCAR-5 Homo sapiens (Human)  1
1
GI50 = 6606.93 nM
   TI
   LI
   LO
   TS