General Information of the Compound
Compound ID
CP0049976
Compound Name
(6E)-N-[(4-hydroxy-3-methoxyphenyl)methyl]-8-methylnon-6-enamide
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Synonyms
Capsaicin
Capsaicin (transdermal patch formulation, neuropathic pain)
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Structure
Formula
C18H27NO3
Molecular Weight
305.418
Canonical SMILES
COc1cc(CNC(=O)CCCC\C=C\C(C)C)ccc1O
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InChI
InChI=1S/C18H27NO3/c1-14(2)8-6-4-5-7-9-18(21)19-13-15-10-11-16(20)17(12-15)22-3/h6,8,10-12,14,20H,4-5,7,9,13H2,1-3H3,(H,19,21)/b8-6+
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InChIKey
YKPUWZUDDOIDPM-SOFGYWHQSA-N
CAS
404-86-4
Physicochemical Property
logP
3.7896
Rotatable Bonds
9
Heavy Atom Count
22
Polar Areas
58.56
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Complexity
22

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 1548943
SID: 14923155
ChEMBL ID
CHEMBL294199
DrugBank ID
DB06774
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT01298, Cannabinoid receptor 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000006 HEK293 Homo sapiens (Human)  1
1
Ki > 10000 nM
   TI
   LI
   LO
   TS
Protein ID: PT00834, Cannabinoid receptor 2
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000006 HEK293 Homo sapiens (Human)  1
1
Ki > 10000 nM
   TI
   LI
   LO
   TS
Protein ID: PT01002, Cytochrome P450 1A2
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000023 BTI-Tn-5B1-4 Trichoplusia ni (Cabbage looper)  1
1
IC50 = 3000 nM
   TI
   LI
   LO
   TS
Protein ID: PT06117, Transient receptor potential cation channel subfamily M member 8
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000058 T-REx-293 Homo sapiens (Human)  2
1
IC50 = 28000 nM
   TI
   LI
   LO
   TS
2
IC50 > 100000 nM
   TI
   LI
   LO
   TS
Protein ID: PT02183, Transient receptor potential cation channel subfamily V member 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000006 HEK293 Homo sapiens (Human)  8
1
EC50 = 2.512 nM
   TI
   LI
   LO
   TS
2
EC50 = 3.9 nM
   TI
   LI
   LO
   TS
3
EC50 = 5.3 nM
   TI
   LI
   LO
   TS
4
EC50 = 19.95 nM
   TI
   LI
   LO
   TS
5
EC50 = 20 nM
   TI
   LI
   LO
   TS
6
EC50 = 29 nM
   TI
   LI
   LO
   TS
7
EC50 = 40 nM
   TI
   LI
   LO
   TS
8
IC50 = 8 nM
   TI
   LI
   LO
   TS
CL000011 CHO Cricetulus griseus (Chinese hamster)  3
1
EC50 = 44.8 nM
   TI
   LI
   LO
   TS
2
Ki = 1140 nM
   TI
   LI
   LO
   TS
3
Ki = 2530 nM
   TI
   LI
   LO
   TS
CL000004 SH-SY5Y Homo sapiens (Human)  1
1
EC50 = 1000 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 Ki = 6 nM
Protein ID: PT01914, Transient receptor potential cation channel subfamily V member 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000011 CHO Cricetulus griseus (Chinese hamster)  2
1
EC50 = 44.8 nM
   TI
   LI
   LO
   TS
2
Ki = 1700 nM
   TI
   LI
   LO
   TS
CL000004 SH-SY5Y Homo sapiens (Human)  1
1
EC50 = 2320 nM
   TI
   LI
   LO
   TS
CL001009 CHO/VR1 Cricetulus griseus (Chinese hamster)  1
1
Ki = 1808 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 19 nM
2 Ki = 1800 nM
Clinical Information about the Compound
Drug 1 ( Capsaicin )
Drug Name Capsaicin
Company Samyang Corp
Indication
Neuropathic pain
Approved
Target(s)
Transient receptor potential cation channel V1 (TRPV1)
Agonist