General Information of the Compound
Compound ID
CP0004959
Compound Name
S-[(E)-4-[(5R,8S,11S)-5-methyl-6,9,13-trioxo-8-propan-2-yl-10-oxa-3,17-dithia-7,14,19,20-tetrazatricyclo[14.2.1.12,5]icosa-1(18),2(20),16(19)-trien-11-yl]but-3-enyl] octanethioate
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Synonyms
(+)-Largazole
CHEMBL1173445
LARGAZOLE
SCHEMBL71330
ZINC56861395
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Structure
Formula
C29H42N4O5S3
Molecular Weight
622.879
Canonical SMILES
CCCCCCCC(=O)SCC\C=C\[C@@H]1CC(=O)NCc2nc(cs2)C2=N[C@@](C)(CS2)C(=O)N[C@@H](C(C)C)C(=O)O1
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InChI
InChI=1S/C29H42N4O5S3/c1-5-6-7-8-9-13-24(35)39-14-11-10-12-20-15-22(34)30-16-23-31-21(17-40-23)26-33-29(4,18-41-26)28(37)32-25(19(2)3)27(36)38-20/h10,12,17,19-20,25H,5-9,11,13-16,18H2,1-4H3,(H,30,34)(H,32,37)/b12-10+/t20-,25+,29+/m1/s1
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InChIKey
AXESYCSCGBQJBL-SZPBEECKSA-N
Physicochemical Property
logP
5.0343
Rotatable Bonds
11
Heavy Atom Count
41
Polar Areas
126.82
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
10
Complexity
41

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 24757913
SID: 49661365
ChEMBL ID
CHEMBL1173445
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  1
1
IC50 = 228 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 10.09 nM
2 IC50 = 11.4 nM
3 IC50 = 13.7 nM
4 IC50 = 61 nM
5 IC50 = 69.8 nM
6 IC50 = 230 nM
7 IC50 = 2330 nM
Protein ID: PT00835, Histone deacetylase 2
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  1
1
IC50 = 1520 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 18.65 nM
2 IC50 = 64 nM
3 IC50 = 900 nM
4 IC50 = 1010 nM
Protein ID: PT01499, Histone deacetylase 8
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  1
1
IC50 = 120 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 1068 nM
2 IC50 > 10000 nM
3 IC50 > 30000 nM
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000067 HCT 116 Homo sapiens (Human)  1
1
IC50 = 44 nM
   TI
   LI
   LO
   TS
CL000111 MDA-MB-231 Homo sapiens (Human)  1
1
IC50 = 4750 nM
   TI
   LI
   LO
   TS
Clinical Information about the Compound
Drug 1 ( LARGAZOLE )
Drug Name LARGAZOLE
Target(s)
Histone deacetylase 1 (HDAC1)
Inhibitor
Histone deacetylase 4 (HDAC4)
Inhibitor