General Information of the Protein
Protein ID
PT03467
Protein Name
DNA topoisomerase 1
Secondarily
Protein Name
DNA topoisomerase I
Gene Name
TOP1
Secondarily
Gene Name
Top-1
Sequence
MSGDHLHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKERRKEEKIRAAGDAKIKKEKENGFSSPPRIKDEPEDDGYFAPPKEDIKPLKRLRDEDDADYKPKKIKTEDIKKEKKRKSEEEEDGKLKKPKNKDKDKKVAEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF
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Organism
Mus musculus, Mouse
Protein Classification
Enzyme
>
Isomerase
Function
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then rotates around the intact phosphodiester bond on the opposing strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells. Involved in the circadian transcription of the core circadian clock component BMAL1 by altering the chromatin structure around the ROR response elements (ROREs) on the BMAL1 promoter.
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Uniprot ID
Primary ID:
Q04750

Secondarily ID:
A2A4B7
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Ensembl ID
ENSG00000198900
Subcellular Location
Nucleus
Nucleolus
Nucleus
Nucleoplasm
Map of Molecular Bioactivity Related to the Protein
Map of Molecular Bioactivity Related to the Protein

Protein
Cell Line
Compound

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Protein
Cell Line ID: CL000369 , P388/S
Compound ID Compound Name Compound Formula
CP0224328
13-(1,3-dihydroxypropan-2-ylamino)-6,20-dihydroxy-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17(22),18,20-nonaene-12,14-dione
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C29H28N4O11
 1
1
EC50 = 1.5 nM
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CP0264632
2,10-Dihydroxy-6-[(3-hydroxybenzyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H28N4O11
 1
1
EC50 = 23 nM
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CP0163461
2,10-Dihydroxy-6-{[2-(hydroxymethyl)benzyl]amino}-13-(beta-Dglucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C34H30N4O11
 1
1
EC50 = 24 nM
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CP0036990
2,10-Dihydroxy-6-({[6-(hydroxymethyl)pyridin-2-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 73 nM
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CP0178369
6-(Benzylamino)-2,10-dihydroxy-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H28N4O10
 1
1
EC50 = 80 nM
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CP0333357
2,10-Dihydroxy-6-({[5-(hydroxymethyl)pyridin-3-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 90 nM
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CP0316909
2,10-Dihydroxy-6-({[2-(hydroxymethyl)pyridin-4-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 100 nM
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CP0280882
2,10-Dihydroxy-6-[(4-hydroxybenzyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H28N4O11
 1
1
EC50 = 120 nM
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CP0316908
2,10-Dihydroxy-6-({[5-(hydroxymethyl)pyridin-2-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 120 nM
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CP0091014
2,10-Dihydroxy-6-({[6-(hydroxymethyl)pyridin-3-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 130 nM
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CP0199012
2,10-Dihydroxy-6-({[3-(hydroxymethyl)pyridin-4-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 130 nM
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CP0237965
2,10-Dihydroxy-6-({[4-(hydroxymethyl)pyridin-2-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 160 nM
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CP0288971
6-[(2-Furylmethyl)amino]-2,10-dihydroxy-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C31H26N4O11
 1
1
EC50 = 180 nM
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CP0264635
2,10-Dihydroxy-6-[(pyrazin-2-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C31H26N6O10
 1
1
EC50 = 210 nM
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CP0333355
2,10-Dihydroxy-6-{[3-(hydroxymethyl)benzyl]amino}-13-(beta-Dglucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C34H30N4O11
 1
1
EC50 = 220 nM
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CP0269238
2,10-Dihydroxy-6-({[3-(hydroxymethyl)pyridin-2-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 = 400 nM
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CP0036989
2,10-Dihydroxy-6-[(pyridin-4-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C32H27N5O10
 1
1
EC50 = 420 nM
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CP0330921
6-[(3-Furylmethyl)amino]-2,10-dihydroxy-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C31H26N4O11
 1
1
EC50 = 470 nM
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CP0330922
2,10-Dihydroxy-6-{[4-(hydroxymethyl)benzyl]amino}-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C34H30N4O11
 1
1
EC50 = 600 nM
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CP0274381
2,10-Dihydroxy-6-[(pyridin-2-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C32H27N5O10
 1
1
EC50 = 800 nM
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CP0092152
2,10-Dihydroxy-6-[(4-cyanobenzyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C34H27N5O10
 1
1
EC50 = 1700 nM
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CP0269237
2,10-Dihydroxy-6-[(quinolin-2-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C36H29N5O10
 1
1
EC50 = 1800 nM
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CP0333361
2,10-Dihydroxy-6-[(4-nitrolbenzyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H27N5O12
 1
1
EC50 = 6000 nM
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CP0333356
2,10-Dihydroxy-6-[(1H-pyrrol-2-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C31H27N5O10
 1
1
EC50 = 6500 nM
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CP0199009
2,10-Dihydroxy-6-[(quinolin-4-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C36H29N5O10
 1
1
EC50 = 10000 nM
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CP0199011
2,10-Dihydroxy-6-[(4-bromobenzyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H27BrN4O10
 1
1
EC50 = 10000 nM
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CP0221706
2,10-Dihydroxy-6-({[4-(hydroxymethyl)pyridin-3-yl]methyl}amino)-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C33H29N5O11
 1
1
EC50 > 10000 nM
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CP0236020
2,10-Dihydroxy-6-[(pyridin-3-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C32H27N5O10
 1
1
EC50 > 10000 nM
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CP0311569
2,10-Dihydroxy-6-[(quinolin-3-ylmethyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C36H29N5O10
 1
1
EC50 > 10000 nM
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CP0333359
2,10-Dihydroxy-6-[(4-methylbenzyl)amino]-13-(beta-D-glucopyranosyl)-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione
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C34H30N4O10
 1
1
EC50 > 10000 nM
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Biochemical Assays
Compound ID Compound Name Compound Formula
CP0036977
(S)-4-ethyl-4-hydroxy-1,12-dihydro-4H-2-oxa-6,12a-diaza-dibenzo[b,h]florene-3,13-dione
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C20H16N2O4
 1
1 IC50 = 40000 nM