General Information of the Compound
Compound ID
CP0439117
Compound Name
2-Benzyl-4-piperazin-1-yl-1H-benzimidazole
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Synonyms
2-Benzyl-4-piperazin-1-yl-1H-benzimidazole
CHEMBL578411
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Structure
Formula
C18H20N4
Molecular Weight
292.386
Canonical SMILES
C(c1nc2c(cccc2[nH]1)N1CCNCC1)c1ccccc1
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InChI
InChI=1S/C18H20N4/c1-2-5-14(6-3-1)13-17-20-15-7-4-8-16(18(15)21-17)22-11-9-19-10-12-22/h1-8,19H,9-13H2,(H,20,21)
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InChIKey
YTVICZASURPPDE-UHFFFAOYSA-N
Physicochemical Property
logP
2.5633
Rotatable Bonds
3
Heavy Atom Count
22
Polar Areas
43.95
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Complexity
22

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 45488131
SID: 96032585
ChEMBL ID
CHEMBL578411
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT01354, 5-hydroxytryptamine receptor 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000053 COS-7 Chlorocebus aethiops (Green monkey)  1
1
Ki = 31 nM
   TI
   LI
   LO
   TS
CL000006 HEK293 Homo sapiens (Human)  1
1
Ki = 58 nM
   TI
   LI
   LO
   TS
Protein ID: PT00941, 5-hydroxytryptamine receptor 7
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000006 HEK293 Homo sapiens (Human)  1
1
Ki > 500 nM
   TI
   LI
   LO
   TS
Clinical Information about the Compound
Drug 1 ( 2-Benzyl-4-piperazin-1-yl-1H-benzimidazole )
Drug Name 2-Benzyl-4-piperazin-1-yl-1H-benzimidazole
Target(s)
5-HT 6 receptor (HTR6)
Inhibitor