General Information of the Compound
Compound ID
CP0133124
Compound Name
5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-[[6-(trifluoromethyl)pyridin-3-yl]methyl]pyridin-2-amine
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Synonyms
PLX-3397
Pexidartinib
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Structure
Formula
C20H15ClF3N5
Molecular Weight
417.822
Canonical SMILES
FC(F)(F)c1ccc(CNc2ccc(Cc3c[nH]c4ncc(Cl)cc34)cn2)cn1
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InChI
InChI=1S/C20H15ClF3N5/c21-15-6-16-14(10-28-19(16)29-11-15)5-12-2-4-18(26-7-12)27-9-13-1-3-17(25-8-13)20(22,23)24/h1-4,6-8,10-11H,5,9H2,(H,26,27)(H,28,29)
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InChIKey
JGWRKYUXBBNENE-UHFFFAOYSA-N
CAS
1029044-16-3
Physicochemical Property
logP
5.228
Rotatable Bonds
5
Heavy Atom Count
29
Polar Areas
66.49
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Complexity
29

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 25151352
SID: 57245138
ChEMBL ID
CHEMBL3813873
DrugBank ID
DB12978
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT01223, Aurora kinase B
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  1
1
IC50 = 643 nM
   TI
   LI
   LO
   TS
Protein ID: PT01008, Macrophage colony-stimulating factor 1 receptor
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  2
1
IC50 = 13 nM
   TI
   LI
   LO
   TS
2
IC50 = 35 nM
   TI
   LI
   LO
   TS
CL000040 THP-1 Homo sapiens (Human)  1
1
IC50 = 17 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 1.7 nM
2 IC50 = 12 nM
3 IC50 = 13 nM
4 IC50 = 20 nM
Protein ID: PT02032, Macrophage colony-stimulating factor 1 receptor
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000124 NFS-60 Mus musculus (Mouse)  1
1
IC50 = 14 nM
   TI
   LI
   LO
   TS
Clinical Information about the Compound
Drug 1 ( Pexidartinib )
Drug Name Pexidartinib
Company Plexxikon Inc
Indication
Tenosynovial giant cell tumour
Approved
Alzheimer disease
Phase 3
Pigmented villonodular synovitis
Phase 3
Neurofibromatosis type 1
Phase 1/2
Target(s)
Macrophage colony-stimulating factor 1 receptor (CSF1R)
Inhibitor
Tyrosine-protein kinase Kit (KIT)
Inhibitor
Fms-like tyrosine kinase 3 (FLT-3)
Inhibitor