General Information of the Compound
Compound ID
CP0015738
Compound Name
(1S,4S,7Z,10S,16E,21R)-7-ethylidene-4,21-bis(propan-2-yl)-2-oxa-12,13-dithia-5,8,20,23-tetraazabicyclo[8.7.6]tricos-16-ene-3,6,9,19,22-pentone
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Synonyms
(1S,4S,7Z,10S,16E,21R)-7-Ethylidene-4,21-bis(1-methylethyl)-2-oxa-12,13-dithia-5,8,20,23-tetraazabicyclo(8.7.6)tricos-16-ene-3,6,9,19,22-pentone
(1S,4S,7Z,10S,16E,21R)-7-ethylidene-4,21-di(propan-2-yl)-2-oxa-12,13-dithia-5,8,20,23-tetraazabicyclo[8.7.6]tricos-16-ene-3,6,9,19,22-pentone
(1S,4S,7Z,10S,16E,21R)-7-ethylidene-4,21-di(propan-2-yl)-2-oxa-12,13-dithia-5,8,20,23-tetrazabicyclo[8.7.6]tricos-16-ene-3,6,9,19,22-pentone
Antibiotic FR 901228
Chromadax
Chromadax (TN)
Cyclo((2Z)-2-amino-2-butenoyl-L-valyl-(3S,4E)-3-hydroxy-7-mercapto-4-heptenoyl-D-valyl-D-cysteinyl), cyclic (35)-disulfide
FK 228
FK-228
FK-901228
FK228
FR 901228
FR-901228
FR901228
HDInhib_000006
Istodax
Istodax (TN)
L-Valine, N-((3S,4E)-3-hydroxy-7-mercapto-1-oxo-4-heptenyl)-D-valyl-D-cysteinyl-(2Z)-2-amino-2-butenoxyl-, (4-1)-lactone, cyclic (1-2)-disulfide
Romidepsin
Romidepsin (USAN)
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Structure
Formula
C24H36N4O6S2
Molecular Weight
540.708
Canonical SMILES
C\C=C1/NC(=O)[C@H]2CSSCC\C=C\[C@H](CC(=O)N[C@H](C(C)C)C(=O)N2)OC(=O)[C@@H](NC1=O)C(C)C
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InChI
InChI=1S/C24H36N4O6S2/c1-6-16-21(30)28-20(14(4)5)24(33)34-15-9-7-8-10-35-36-12-17(22(31)25-16)26-23(32)19(13(2)3)27-18(29)11-15/h6-7,9,13-15,17,19-20H,8,10-12H2,1-5H3,(H,25,31)(H,26,32)(H,27,29)(H,28,30)/b9-7+,16-6-/t15-,17-,19-,20+/m1/s1
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InChIKey
OHRURASPPZQGQM-GCCNXGTGSA-N
CAS
128517-07-7
Physicochemical Property
logP
1.4296
Rotatable Bonds
2
Heavy Atom Count
36
Polar Areas
142.7
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
8
Complexity
36

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 5352062
SID: 12014448
ChEMBL ID
CHEMBL343448
DrugBank ID
DB06176
Table of Molecular Bioactivities Related to the Compound
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000007 HT-29 Homo sapiens (Human)  1
1
GI50 = 3.3 nM
   TI
   LI
   LO
   TS
CL000083 MCF-7 Homo sapiens (Human)  1
1
GI50 = 4.2 nM
   TI
   LI
   LO
   TS
CL000117 SF539 Homo sapiens (Human)  1
1
GI50 = 3.6 nM
   TI
   LI
   LO
   TS
CL000249 OVCAR-3 Homo sapiens (Human)  1
1
GI50 = 4.6 nM
   TI
   LI
   LO
   TS
Clinical Information about the Compound
Drug 1 ( Romidepsin )
Drug Name Romidepsin
Company Gloucester Pharmaceuticals; Fujisawa Pharmaceutical Ltd.
Indication
Cutaneous T-cell lymphoma
Approved
Renal cell carcinoma
Phase 3
Peripheral T-cell lymphoma
Phase 2
Target(s)
Histone deacetylase 1 (HDAC1)
Inhibitor