General Information of the Protein
Protein ID
PT03901
Protein Name
Histone deacetylase 1
Secondarily
Protein Name
Protein deacetylase HDAC1
Protein decrotonylase HDAC1
Gene Name
HDAC1
Sequence
MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVKLA
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Organism
Mus musculus, Mouse
Protein Classification
Epigenetic regulator
>
Eraser
>
Histone deacetylase
>
HDAC class I
Function
Histone deacetylase that catalyzes the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4) (PubMed:10615135, PubMed:15542849, PubMed:21960634, PubMed:30279482). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (PubMed:10615135, PubMed:15542849, PubMed:21960634). Histone deacetylases act via the formation of large multiprotein complexes (PubMed:10615135, PubMed:21960634). Acts as a component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin (By similarity). Also functions as a deacetylase for non-histone targets, such as NR1D2, RELA, SP1, SP3 and TSHZ3 (By similarity). Deacetylates SP proteins, SP1 and SP3, and regulates their function (By similarity). Component of the BRG1-RB1-HDAC1 complex, which negatively regulates the CREST-mediated transcription in resting neurons (By similarity). Upon calcium stimulation, HDAC1 is released from the complex and CREBBP is recruited, which facilitates transcriptional activation (By similarity). Deacetylates TSHZ3 and regulates its transcriptional repressor activity (By similarity). Deacetylates 'Lys-310' in RELA and thereby inhibits the transcriptional activity of NF-kappa-B (By similarity). Deacetylates NR1D2 and abrogates the effect of KAT5-mediated relieving of NR1D2 transcription repression activity (By similarity). Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development (PubMed:17707228). Involved in CIART-mediated transcriptional repression of the circadian transcriptional activator: CLOCK-BMAL1 heterodimer (PubMed:15226430, PubMed:24736997). Required for the transcriptional repression of circadian target genes, such as PER1, mediated by the large PER complex or CRY1 through histone deacetylation (PubMed:15226430). In addition to protein deacetylase activity, also has protein-lysine deacylase activity: acts as a protein decrotonylase by mediating decrotonylation ((2E)-butenoyl) of histones (PubMed:30279482).
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Uniprot ID
Primary ID:
O09106

Secondarily ID:
P97476
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Ensembl ID
ENSG00000116478
Subcellular Location
Nucleus
Map of Molecular Bioactivity Related to the Protein
Map of Molecular Bioactivity Related to the Protein

Protein
Cell Line
Compound

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Protein
Cell Line ID: CL000160 , A20
Compound ID Compound Name Compound Formula
CP0005479
CHEBI:46024
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C17H22N2O3
 2
1
IC50 = 2 nM
   TI
   LI
   LO
   TS
2
Ki = 1.072 nM
   TI
   LI
   LO
   TS
CP0003832
N'-hydroxy-N-phenyloctanediamide
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C14H20N2O3
 2
1
IC50 = 112 nM
   TI
   LI
   LO
   TS
2
Ki = 67.61 nM
   TI
   LI
   LO
   TS
CP0039897
3-[(E)-4-(4-Dimethylamino-benzoyl)-1-methyl-1H-pyrrol-2-yl]-N-hydroxy-acrylamide
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C17H19N3O3
 2
1
IC50 = 4200 nM
   TI
   LI
   LO
   TS
2
Ki = 2511.89 nM
   TI
   LI
   LO
   TS
CP0039170
(E)-N-hydroxy-3-[1-methyl-4-(4-methylbenzoyl)pyrrol-2-yl]prop-2-enamide
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C16H16N2O3
 2
1
IC50 = 4500 nM
   TI
   LI
   LO
   TS
2
Ki = 2691.53 nM
   TI
   LI
   LO
   TS
CP0137620
3-((E)-4-Benzoyl-1-methyl-1H-pyrrol-2-yl)-N-hydroxy-acrylamide
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C15H14N2O3
 2
1
IC50 = 4900 nM
   TI
   LI
   LO
   TS
2
Ki = 2951.21 nM
   TI
   LI
   LO
   TS
Biochemical Assays
Compound ID Compound Name Compound Formula
CP0005479
CHEBI:46024
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C17H22N2O3
 3
1 IC50 = 1.8 nM
2 IC50 = 1.995 nM
3 IC50 ~ 2 nM
CP0003832
N'-hydroxy-N-phenyloctanediamide
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C14H20N2O3
 4
1 IC50 = 112 nM
2 IC50 = 112.2 nM
3 IC50 = 113.498789 nM
4 IC50 ~ 112 nM
Similar Protein(s) and Bioactivity Statistics
90% Identity
Protein ID Protein Name Protein Organism
PT00991 Histone deacetylase 1 Homo sapiens, Human
50% Identity
Protein ID Protein Name Protein Organism
PT00835 Histone deacetylase 2 Homo sapiens, Human