General Information of the Compound
Compound ID
CP0501789
Compound Name
(2S)-2-amino-N-cyclopentyl-7-sulfanylheptanamide
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Synonyms
(S)-2-Amino-N-cyclopentyl-7-mercaptoheptanamide
BDBM19139
CHEMBL235911
SCHEMBL16338810
thiolate analogue, 26a
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Structure
Formula
C12H24N2OS
Molecular Weight
244.404
Canonical SMILES
N[C@@H](CCCCCS)C(=O)NC1CCCC1
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InChI
InChI=1S/C12H24N2OS/c13-11(8-2-1-5-9-16)12(15)14-10-6-3-4-7-10/h10-11,16H,1-9,13H2,(H,14,15)/t11-/m0/s1
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InChIKey
BNEXTTBMNDFSSZ-NSHDSACASA-N
Physicochemical Property
logP
1.8627
Rotatable Bonds
7
Heavy Atom Count
16
Polar Areas
55.12
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
3
Complexity
16

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 23634888
ChEMBL ID
CHEMBL235911
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000035 NIH 3T3 Mus musculus (Mouse)  1
1
IC50 = 52300 nM
   TI
   LI
   LO
   TS
Protein ID: PT00994, Histone deacetylase 4
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000006 HEK293 Homo sapiens (Human)  1
1
IC50 = 31200 nM
   TI
   LI
   LO
   TS
Protein ID: PT03064, Histone deacetylase 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000006 HEK293 Homo sapiens (Human)  1
1
IC50 = 3860 nM
   TI
   LI
   LO
   TS
Clinical Information about the Compound
Drug 1 ( (S)-2-Amino-N-cyclopentyl-7-mercaptoheptanamide )
Drug Name (S)-2-Amino-N-cyclopentyl-7-mercaptoheptanamide
Target(s)
Histone deacetylase 6 (HDAC6)
Inhibitor