General Information of the Compound
Compound ID
CP0459854
Compound Name
(3S,9S,12R)-3,6,6-trimethyl-9-[5-(pyridin-2-yldisulfanyl)pentyl]-1,4,7,10-tetrazatricyclo[10.8.0.014,19]icosa-14,16,18-triene-5,8,11-trione
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Synonyms
CHEMBL238587
Cyclo(-L-Am7(S2Py)-Aib-L-Ala-D-Tic-)
cyclo(-L-Am7(S2Py)-Aib-L-Ala-D-Tic-)
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Structure
Formula
C29H39N5O3S2
Molecular Weight
569.797
Canonical SMILES
C[C@H]1CN2Cc3ccccc3C[C@@H]2C(=O)N[C@@H](CCCCCSSc2ccccn2)C(=O)NC(C)(C)C(=O)N1
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InChI
InChI=1S/C29H39N5O3S2/c1-20-18-34-19-22-12-7-6-11-21(22)17-24(34)27(36)32-23(26(35)33-29(2,3)28(37)31-20)13-5-4-10-16-38-39-25-14-8-9-15-30-25/h6-9,11-12,14-15,20,23-24H,4-5,10,13,16-19H2,1-3H3,(H,31,37)(H,32,36)(H,33,35)/t20-,23-,24+/m0/s1
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InChIKey
ALYDIERJMKHYLO-NKKJXINNSA-N
Physicochemical Property
logP
3.7071
Rotatable Bonds
8
Heavy Atom Count
39
Polar Areas
103.43
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Complexity
39

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 44437875
ChEMBL ID
CHEMBL238587
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 4.7 nM
   TI
   LI
   LO
   TS
Protein ID: PT00994, Histone deacetylase 4
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 4.2 nM
   TI
   LI
   LO
   TS
Protein ID: PT03064, Histone deacetylase 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 29 nM
   TI
   LI
   LO
   TS
Clinical Information about the Compound
Drug 1 ( Cyclo(-L-Am7(S2Py)-Aib-L-Ala-D-Tic-) )
Drug Name Cyclo(-L-Am7(S2Py)-Aib-L-Ala-D-Tic-)
Target(s)
Histone deacetylase 1 (HDAC1)
Inhibitor
Histone deacetylase 6 (HDAC6)
Inhibitor
Histone deacetylase 4 (HDAC4)
Inhibitor