General Information of the Compound
Compound ID
CP0405350
Compound Name
N-[4-[2-[(2S,3S,5R)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]-1,3-dithian-2-yl]phenyl]-N'-hydroxyhexanediamide
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Structure
Formula
C32H48N4O7S2Si
Molecular Weight
692.977
Canonical SMILES
Cc1cn([C@H]2C[C@@H]([C@@H](CO[Si](C)(C)C(C)(C)C)O2)C2(SCCCS2)c2ccc(NC(=O)CCCCC(=O)NO)cc2)c(=O)[nH]c1=O
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InChI
InChI=1S/C32H48N4O7S2Si/c1-21-19-36(30(40)34-29(21)39)28-18-24(25(43-28)20-42-46(5,6)31(2,3)4)32(44-16-9-17-45-32)22-12-14-23(15-13-22)33-26(37)10-7-8-11-27(38)35-41/h12-15,19,24-25,28,41H,7-11,16-18,20H2,1-6H3,(H,33,37)(H,35,38)(H,34,39,40)/t24-,25+,28+/m0/s1
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InChIKey
KJTGZLBZRSTGCL-BXTSTYNKSA-N
Physicochemical Property
logP
5.49792
Rotatable Bonds
12
Heavy Atom Count
46
Polar Areas
151.75
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
10
Complexity
46

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 145969692
ChEMBL ID
CHEMBL4225893
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 2500 nM
   TI
   LI
   LO
   TS
Protein ID: PT03064, Histone deacetylase 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 560 nM
   TI
   LI
   LO
   TS
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000067 HCT 116 Homo sapiens (Human)  1
1
GI50 = 26300 nM
   TI
   LI
   LO
   TS
CL000119 DU145 Homo sapiens (Human)  1
1
GI50 = 14800 nM
   TI
   LI
   LO
   TS