General Information of the Compound
Compound ID
CP0231885
Compound Name
1-[(2R,4S,5S)-5-[[tert-butyl(dimethyl)silyl]oxymethyl]-4-[2-(3,4-dimethoxyphenyl)-1,3-dithian-2-yl]oxolan-2-yl]-5-methylpyrimidine-2,4-dione
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Structure
Formula
C28H42N2O6S2Si
Molecular Weight
594.872
Canonical SMILES
COc1ccc(cc1OC)C1(SCCCS1)[C@H]1C[C@@H](O[C@@H]1CO[Si](C)(C)C(C)(C)C)n1cc(C)c(=O)[nH]c1=O
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InChI
InChI=1S/C28H42N2O6S2Si/c1-18-16-30(26(32)29-25(18)31)24-15-20(23(36-24)17-35-39(7,8)27(2,3)4)28(37-12-9-13-38-28)19-10-11-21(33-5)22(14-19)34-6/h10-11,14,16,20,23-24H,9,12-13,15,17H2,1-8H3,(H,29,31,32)/t20-,23+,24+/m0/s1
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InChIKey
XOVCHKAKMMRPCH-TUACAJSNSA-N
Physicochemical Property
logP
5.51082
Rotatable Bonds
8
Heavy Atom Count
39
Polar Areas
91.78
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
9
Complexity
39

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 132576588
ChEMBL ID
CHEMBL4080410
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 > 10000 nM
   TI
   LI
   LO
   TS
Protein ID: PT03064, Histone deacetylase 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 > 10000 nM
   TI
   LI
   LO
   TS
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000067 HCT 116 Homo sapiens (Human)  1
1
GI50 = 3630 nM
   TI
   LI
   LO
   TS
CL000083 MCF-7 Homo sapiens (Human)  1
1
GI50 = 3310 nM
   TI
   LI
   LO
   TS
CL000119 DU145 Homo sapiens (Human)  1
1
GI50 = 3720 nM
   TI
   LI
   LO
   TS