General Information of the Compound
Compound ID
CP0038703
Compound Name
6-{3-[2-Butyl-1-(2-pyrrolidin-1-yl-ethyl)-1H-benzimidazole-5-carbonyl]-ureido}-hexanoic acidhydroxyamide
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Structure
Formula
C25H38N6O4
Molecular Weight
486.617
Canonical SMILES
CCCCc1nc2cc(ccc2n1CCN1CCCC1)C(=O)NC(=O)NCCCCCC(=O)NO
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InChI
InChI=1S/C25H38N6O4/c1-2-3-9-22-27-20-18-19(11-12-21(20)31(22)17-16-30-14-7-8-15-30)24(33)28-25(34)26-13-6-4-5-10-23(32)29-35/h11-12,18,35H,2-10,13-17H2,1H3,(H,29,32)(H2,26,28,33,34)
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InChIKey
RYJVQXRRTHIVGC-UHFFFAOYSA-N
Physicochemical Property
logP
2.9799
Rotatable Bonds
13
Heavy Atom Count
35
Polar Areas
128.59
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
7
Complexity
35

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 46890117
ChEMBL ID
CHEMBL1084624
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000163 COLO 205 Homo sapiens (Human)  1
1
IC50 = 2910 nM
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Biochemical Assays
1 IC50 = 22 nM
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000067 HCT 116 Homo sapiens (Human)  1
1
IC50 = 3520 nM
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