General Information of the Protein
Protein ID
PT03970
Protein Name
Nucleotide-binding oligomerization domain-containing protein 2
Secondarily
Protein Name
Caspase recruitment domain-containing protein 15
Inflammatory bowel disease protein 1
Gene Name
NOD2
Secondarily
Gene Name
CARD15
Sequence
MGEEGGSASHDEEERASVLLGHSPGCEMCSQEAFQAQRSQLVELLVSGSLEGFESVLDWLLSWEVLSWEDYEGFHLLGQPLSHLARRLLDTVWNKGTWACQKLIAAAQEAQADSQSPKLHGCWDPHSLHPARDLQSHRPAIVRRLHSHVENMLDLAWERGFVSQYECDEIRLPIFTPSQRARRLLDLATVKANGLAAFLLQHVQELPVPLALPLEAATCKKYMAKLRTTVSAQSRFLSTYDGAETLCLEDIYTENVLEVWADVGMAGPPQKSPATLGLEELFSTPGHLNDDADTVLVVGEAGSGKSTLLQRLHLLWAAGQDFQEFLFVFPFSCRQLQCMAKPLSVRTLLFEHCCWPDVGQEDIFQLLLDHPDRVLLTFDGFDEFKFRFTDRERHCSPTDPTSVQTLLFNLLQGNLLKNARKVVTSRPAAVSAFLRKYIRTEFNLKGFSEQGIELYLRKRHHEPGVADRLIRLLQETSALHGLCHLPVFSWMVSKCHQELLLQEGGSPKTTTDMYLLILQHFLLHATPPDSASQGLGPSLLRGRLPTLLHLGRLALWGLGMCCYVFSAQQLQAAQVSPDDISLGFLVRAKGVVPGSTAPLEFLHITFQCFFAAFYLALSADVPPALLRHLFNCGRPGNSPMARLLPTMCIQASEGKDSSVAALLQKAEPHNLQITAAFLAGLLSREHWGLLAECQTSEKALLRRQACARWCLARSLRKHFHSIPPAAPGEAKSVHAMPGFIWLIRSLYEMQEERLARKAARGLNVGHLKLTFCSVGPTECAALAFVLQHLRRPVALQLDYNSVGDIGVEQLLPCLGVCKALYLRDNNISDRGICKLIECALHCEQLQKLALFNNKLTDGCAHSMAKLLACRQNFLALRLGNNYITAAGAQVLAEGLRGNTSLQFLGFWGNRVGDEGAQALAEALGDHQSLRWLSLVGNNIGSVGAQALALMLAKNVMLEELCLEENHLQDEGVCSLAEGLKKNSSLKILKLSNNCITYLGAEALLQALERNDTILEVWLRGNTFSLEEVDKLGCRDTRLLL
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Organism
Homo sapiens, Human
Protein Classification
Unclassified protein
Function
Pattern recognition receptor (PRR) that detects bacterial peptidoglycan fragments and other danger signals and plays an important role in gastrointestinal immunity (PubMed:12514169, PubMed:12527755, PubMed:12626759, PubMed:15044951, PubMed:15998797, PubMed:27283905, PubMed:27748583, PubMed:31649195). Specifically activated by muramyl dipeptide (MDP), a fragment of bacterial peptidoglycan found in every bacterial peptidoglycan type (PubMed:12514169, PubMed:12871942, PubMed:12527755, PubMed:12626759, PubMed:15044951, PubMed:15998797, PubMed:22857257, PubMed:23322906, PubMed:27748583, PubMed:36002575, PubMed:15198989). NOD2 specifically recognizes and binds 6-O-phospho-MDP, the phosphorylated form of MDP, which is generated by NAGK (PubMed:36002575). 6-O-phospho-MDP-binding triggers oligomerization that facilitates the binding and subsequent activation of the proximal adapter receptor-interacting RIPK2 (PubMed:11087742, PubMed:17355968, PubMed:21887730, PubMed:23806334, PubMed:28436939). Following recruitment, RIPK2 undergoes 'Met-1'- (linear) and 'Lys-63'-linked polyubiquitination by E3 ubiquitin-protein ligases XIAP, BIRC2, BIRC3 and the LUBAC complex, becoming a scaffolding protein for downstream effectors, triggering activation of the NF-kappa-B and MAP kinases signaling (PubMed:11087742, PubMed:12514169, PubMed:12626759, PubMed:21887730, PubMed:23806334, PubMed:23322906, PubMed:28436939, PubMed:15198989). This in turn leads to the transcriptional activation of hundreds of genes involved in immune response (PubMed:15198989). Its ability to detect bacterial MDP plays a central role in maintaining the equilibrium between intestinal microbiota and host immune responses to control inflammation (By similarity). An imbalance in this relationship results in dysbiosis, whereby pathogenic bacteria prevail on commensals, causing damage in the intestinal epithelial barrier as well as allowing bacterial invasion and inflammation (By similarity). Acts as a regulator of appetite by sensing MDP in a subset of brain neurons: microbiota-derived MDP reach the brain, where they bind and activate NOD2 in inhibitory hypothalamic neurons, decreasing neuronal activity, thereby regulating satiety and body temperature (By similarity). NOD2-dependent MDP-sensing of bacterial cell walls in the intestinal epithelial compartment contributes to sustained postnatal growth upon undernutrition (By similarity). Also plays a role in antiviral response by acting as a sensor of single-stranded RNA (ssRNA) from viruses: upon ssRNA-binding, interacts with MAVS, leading to activation of interferon regulatory factor-3/IRF3 and expression of type I interferon (PubMed:19701189). Also acts as a regulator of autophagy in dendritic cells via its interaction with ATG16L1, possibly by recruiting ATG16L1 at the site of bacterial entry (PubMed:20637199). NOD2 activation in the small intestine crypt also contributes to intestinal stem cells survival and function: acts by promoting mitophagy via its association with ATG16L1 (By similarity). In addition to its main role in innate immunity, also regulates the adaptive immune system by acting as regulator of helper T-cell and regulatory T-cells (Tregs) (By similarity). Besides recognizing pathogens, also involved in the endoplasmic reticulum stress response: acts by sensing and binding to the cytosolic metabolite sphingosine-1-phosphate generated in response to endoplasmic reticulum stress, initiating an inflammation process that leads to activation of the NF-kappa-B and MAP kinases signaling (PubMed:27007849, PubMed:33942347). May also be involved in NLRP1 activation following activation by MDP, leading to CASP1 activation and IL1B release in macrophages (PubMed:18511561).
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Uniprot ID
Primary ID:
Q9HC29

Secondarily ID:
E2JEQ6
Q96RH5
Q96RH6
Q96RH8
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Ensembl ID
ENSG00000167207
HGNC ID
HGNC:5331
Subcellular Location
Cell membrane
Basolateral cell membrane
Cytoplasm
Mitochondrion
Map of Molecular Bioactivity Related to the Protein
Map of Molecular Bioactivity Related to the Protein

Protein
Cell Line
Compound

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Protein
Cell Line ID: CL000025 , HEK-293T
Compound ID Compound Name Compound Formula
CP0380858
4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-N-[4-(trifluoromethoxy)phenyl]benzamide
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C24H21F3N2O2
 1
1
IC50 = 30 nM
   TI
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   TS
CP0380861
MLS-0412140.0001
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C23H26N4O5S
 1
1
IC50 = 200 nM
   TI
   LI
   LO
   TS
CP0522500
4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-N-(4-methylsulfanylphenyl)benzamide
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C24H24N2OS
 1
1
IC50 = 260 nM
   TI
   LI
   LO
   TS
CP0410436
MLS-0360553.0001
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C24H29N3O4S
 1
1
IC50 = 390 nM
   TI
   LI
   LO
   TS
CP0449793
4-[4-(3,4-Dihydro-1H-isoquinolin-2-ylmethyl)-benzoylamino]-benzoic acid ethyl ester
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C26H26N2O3
 1
1
IC50 = 400 nM
   TI
   LI
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   TS
CP0304560
4-(3,4-Dihydro-1H-isoquinolin-2-ylmethyl)-N-(4-ethoxy-phenyl)-benzamide
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C25H26N2O2
 1
1
IC50 = 570 nM
   TI
   LI
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CP0380860
1-[5-[4-(4-chlorophenyl)piperazin-1-yl]sulfonyl-2-methyl-2,3-dihydroindol-1-yl]propan-1-one
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C22H26ClN3O3S
 1
1
IC50 = 600 nM
   TI
   LI
   LO
   TS
CP0385707
4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-N-(4-methoxyphenyl)benzamide
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C24H24N2O2
 1
1
IC50 = 780 nM
   TI
   LI
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   TS
CP0415856
1-[2-methyl-5-[4-(4-nitrophenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]ethanone
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C21H24N4O5S
 1
1
IC50 = 1410 nM
   TI
   LI
   LO
   TS
CP0385709
1-[2-methyl-5-[4-(4-nitrophenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]propan-1-one
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C22H26N4O5S
 1
1
IC50 = 1550 nM
   TI
   LI
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CP0474590
1-[5-[4-(4-acetylphenyl)piperazin-1-yl]sulfonyl-2-methyl-2,3-dihydroindol-1-yl]propan-1-one
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C24H29N3O4S
 1
1
IC50 = 1580 nM
   TI
   LI
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   TS
CP0425683
MLS-0425608.0001
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C23H21BrN2O
 1
1
IC50 = 1620 nM
   TI
   LI
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CP0474594
1-[5-[4-(4-chlorophenyl)piperazin-1-yl]sulfonyl-2-methyl-2,3-dihydroindol-1-yl]ethanone
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C21H24ClN3O3S
 1
1
IC50 = 1750 nM
   TI
   LI
   LO
   TS
CP0513874
4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-N-(4-fluorophenyl)benzamide
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C23H21FN2O
 1
1
IC50 = 1850 nM
   TI
   LI
   LO
   TS
CP0474603
1-[5-[4-(4-methoxyphenyl)piperazin-1-yl]sulfonyl-2-methyl-2,3-dihydroindol-1-yl]ethanone
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C22H27N3O4S
 1
1
IC50 = 3290 nM
   TI
   LI
   LO
   TS
CP0410801
1-[2-methyl-5-[4-(4-methylphenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]ethanone
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C22H27N3O3S
 1
1
IC50 = 3450 nM
   TI
   LI
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   TS
CP0460680
N-(4-chlorophenyl)-4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)benzamide
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C23H21ClN2O
 1
1
IC50 = 3540 nM
   TI
   LI
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CP0385712
4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-N-[4-(dimethylamino)phenyl]benzamide
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C25H27N3O
 1
1
IC50 = 3580 nM
   TI
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CP0407273
[5-[4-(4-chlorophenyl)piperazin-1-yl]sulfonyl-2-methyl-2,3-dihydroindol-1-yl]-cyclopropylmethanone
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C23H26ClN3O3S
 1
1
IC50 = 3630 nM
   TI
   LI
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CP0335222
1-[4-[4-(1-acetyl-2-methyl-indolin-5-yl)sulfonylpiperazino]phenyl]ethanone
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C23H27N3O4S
 1
1
IC50 = 3720 nM
   TI
   LI
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   TS
CP0385715
(2-amino-1-benzimidazolyl)-(2,4-dichlorophenyl)methanone
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C14H9Cl2N3O
 1
1
IC50 = 3800 nM
   TI
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CP0474589
1-[4-[4-[(1-cyclopropylcarbonyl-2-methyl-2,3-dihydroindol-5-yl)sulfonyl]piperazin-1-yl]phenyl]ethanone
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C25H29N3O4S
 1
1
IC50 = 7900 nM
   TI
   LI
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   TS
CP0474602
1-[2-methyl-5-(4-phenylpiperazin-1-yl)sulfonyl-2,3-dihydroindol-1-yl]ethanone
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C21H25N3O3S
 1
1
IC50 = 8270 nM
   TI
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CP0408744
MLS-0425662.0001
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C22H24N4O5S
 1
1
IC50 = 8450 nM
   TI
   LI
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CP0425681
4-[4-(1-acetylindolin-5-yl)sulfonylpiperazino]benzonitrile
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C21H22N4O3S
 1
1
IC50 = 9240 nM
   TI
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CP0379409
1-[(4-chlorophenyl)methyl]-2-benzimidazolamine
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C14H12ClN3
 1
1
IC50 = 11900 nM
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CP0460682
MLS-0364000.0001
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C23H27N3O3S
 1
1
IC50 = 17400 nM
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CP0068491
1-(4-chlorophenyl)sulfonyl-2-benzimidazolamine
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C13H10ClN3O2S
 1
1
IC50 = 19900 nM
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CP0134145
2-methyl-1-(4-methylphenyl)sulfonyl-benzimidazole
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C15H14N2O2S
 1
1
IC50 > 20000 nM
   TI
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CP0134147
1-(4-methylphenyl)sulfonylbenzimidazole
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C14H12N2O2S
 1
1
IC50 > 20000 nM
   TI
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CP0142376
(1-tosylbenzimidazol-2-yl)amine
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C14H13N3O2S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0372586
(1-besylbenzimidazol-2-yl)amine
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C13H11N3O2S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0378226
(5,6-dimethyl-1-tosyl-benzimidazol-2-yl)amine
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C16H17N3O2S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0385705
MLS-0412191.0001
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C22H24ClN3O3S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0385706
4-(piperidinomethyl)-N-p-phenetyl-benzamide
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C21H26N2O2
 1
1
IC50 > 20000 nM
   TI
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CP0385708
2-(2-amino-1-benzimidazolyl)-1-(4-methoxyphenyl)ethanone
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C16H15N3O2
 1
1
IC50 > 20000 nM
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CP0385710
1-[5-[4-(4-chlorophenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]propan-1-one
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C21H24ClN3O3S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0385711
MLS-0412144.0001
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C24H29N3O3S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0385713
4-(2,3-dihydroindol-1-ylmethyl)-N-[4-(dimethylamino)phenyl]benzamide
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C24H25N3O
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0385714
1-(4-methoxyphenyl)sulfonyl-2-benzimidazolamine
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C14H13N3O3S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0408678
5-methyl-3-(4-methylphenyl)sulfonyl-1H-benzimidazole-2-thione
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C15H14N2O2S2
 1
1
IC50 > 20000 nM
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CP0408839
3-(2-aminobenzimidazol-1-yl)-1-(4-chlorophenyl)propan-1-one
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C16H14ClN3O
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0415857
4-[4-(1-propionylindolin-5-yl)sulfonylpiperazino]benzonitrile
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C22H24N4O3S
 1
1
IC50 > 20000 nM
   TI
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CP0415858
4-[4-[(1-cyclopropylcarbonyl-2,3-dihydroindol-5-yl)sulfonyl]piperazin-1-yl]benzenecarbonitrile
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C23H24N4O3S
 1
1
IC50 > 20000 nM
   TI
   LI
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   TS
CP0415859
1-[4-[4-[(1-cyclopropylcarbonyl-2,3-dihydroindol-5-yl)sulfonyl]piperazin-1-yl]phenyl]ethanone
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C24H27N3O4S
 1
1
IC50 > 20000 nM
   TI
   LI
   LO
   TS
CP0415860
4-(2,3-dihydroindol-1-ylmethyl)-N-(4-methylsulfanylphenyl)benzamide
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C23H22N2OS
 1
1
IC50 > 20000 nM
   TI
   LI
   LO
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CP0415861
MLS-0412189.0001
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C25H26N2O2
 1
1
IC50 > 20000 nM
   TI
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CP0415862
(2-amino-1-benzimidazolyl)-(4-fluorophenyl)methanone
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C14H10FN3O
 1
1
IC50 > 20000 nM
   TI
   LI
   LO
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CP0415863
1-[5-[4-(4-nitrophenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]propan-1-one
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C21H24N4O5S
 1
1
IC50 > 20000 nM
   TI
   LI
   LO
   TS
CP0415864
1-[5-[4-(4-nitrophenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]ethanone
   Show/Hide
C20H22N4O5S
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0415865
4-(2,3-dihydroindol-1-ylmethyl)-N-(4-methoxyphenyl)benzamide
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C23H22N2O2
 1
1
IC50 > 20000 nM
   TI
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CP0415866
MLS-0412182.0001
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C21H27N3O
 1
1
IC50 > 20000 nM
   TI
   LI
   LO
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CP0460681
MLS-0412145.0001
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C20H24N2O2
 1
1
IC50 > 20000 nM
   TI
   LI
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CP0462631
1-[5-[4-(4-acetylphenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]propan-1-one
   Show/Hide
C23H27N3O4S
 1
1
IC50 > 20000 nM
   TI
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CP0462632
4-(2,3-dihydroindol-1-ylmethyl)-N-(4-fluorophenyl)benzamide
   Show/Hide
C22H19FN2O
 1
1
IC50 > 20000 nM
   TI
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CP0462634
1-[5-[4-(4-chlorophenyl)piperazin-1-yl]sulfonyl-2,3-dihydroindol-1-yl]ethanone
   Show/Hide
C20H22ClN3O3S
 1
1
IC50 > 20000 nM
   TI
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CP0474591
1-[4-[4-(1-acetylindolin-5-yl)sulfonylpiperazino]phenyl]ethanone
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C22H25N3O4S
 1
1
IC50 > 20000 nM
   TI
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CP0474592
4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-N-(4-methylphenyl)benzamide
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C24H24N2O
 1
1
IC50 > 20000 nM
   TI
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CP0474593
MLS-0412075.0001
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C19H21FN2O
 1
1
IC50 > 20000 nM
   TI
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CP0474604
4-(2,3-dihydroindol-1-ylmethyl)-N-(4-ethoxyphenyl)benzamide
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C24H24N2O2
 1
1
IC50 > 20000 nM
   TI
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CP0474605
MLS-0425629.0001
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C24H23ClN2O
 1
1
IC50 > 20000 nM
   TI
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CP0474606
(1-nosylbenzimidazol-2-yl)amine
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C13H10N4O4S
 1
1
IC50 > 20000 nM
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CP0474607
1-(2-amino-1-benzimidazolyl)-2-phenylethanone
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C15H13N3O
 1
1
IC50 > 20000 nM
   TI
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CP0517278
MLS-0412147.0001
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C20H24N2OS
 1
1
IC50 > 20000 nM
   TI
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   TS
CP0517279
4-[[4-[2-(3,4-dihydro-1H-isoquinolin-2-yl)ethyl]benzoyl]amino]benzoic acid ethyl ester
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C27H28N2O3
 1
1
IC50 > 20000 nM
   TI
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CP0517280
4-chloranyl-N-[4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)phenyl]benzamide
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C23H21ClN2O
 1
1
IC50 > 20000 nM
   TI
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CP0517541
4-[[4-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)benzoyl]amino]benzenesulfonic acid
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C23H22N2O4S
 1
1
IC50 > 20000 nM
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CP0548287
4-[2-(3,4-dihydro-1H-isoquinolin-2-yl)ethyl]-N-(4-ethoxyphenyl)benzamide
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C26H28N2O2
 1
1
IC50 > 20000 nM
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Clinical Information about the Protein
Target 1 ( Pattern recognition receptor NOD2 (NOD2) )
Target Type Clinical trial Target