General Information of the Protein
Protein ID
PT02217
Protein Name
Histone-lysine N-methyltransferase SETD2
Secondarily
Protein Name
HIF-1
Huntingtin yeast partner B
Huntingtin-interacting protein 1
Huntingtin-interacting protein B
Lysine N-methyltransferase 3A
Protein-lysine N-methyltransferase SETD2
SET domain-containing protein 2
p231HBP
Gene Name
SETD2
Secondarily
Gene Name
HIF1
HYPB
KIAA1732
KMT3A
SET2
HSPC069
Sequence
MKQLQPQPPPKMGDFYDPEHPTPEEEENEAKIENVQKTGFIKGPMFKGVASSRFLPKGTKTKVNLEEQGRQKVSFSFSLTKKTLQNRFLTALGNEKQSDTPNPPAVPLQVDSTPKMKMEIGDTLSTAEESSPPKSRVELGKIHFKKHLLHVTSRPLLATTTAVASPPTHAAPLPAVIAESTTVDSPPSSPPPPPPPAQATTLSSPAPVTEPVALPHTPITVLMAAPVPLPVDVAVRSLKEPPIIIVPESLEADTKQDTISNSLEEHVTQILNEQADISSKKEDSHIGKDEEIPDSSKISLSCKKTGSKKKSSQSEGIFLGSESDEDSVRTSSSQRSHDLKFSASIEKERDFKKSSAPLKSEDLGKPSRSKTDRDDKYFSYSKLERDTRYVSSRCRSERERRRSRSHSRSERGSRTNLSYSRSERSHYYDSDRRYHRSSPYRERTRYSRPYTDNRARESSDSEEEYKKTYSRRTSSHSSSYRDLRTSSYSKSDRDCKTETSYLEMERRGKYSSKLERESKRTSENEAIKRCCSPPNELGFRRGSSYSKHDSSASRYKSTLSKPIPKSDKFKNSFCCTELNEEIKQSHSFSLQTPCSKGSELRMINKNPEREKAGSPAPSNRLNDSPTLKKLDELPIFKSEFITHDSHDSIKELDSLSKVKNDQLRSFCPIELNINGSPGAESDLATFCTSKTDAVLMTSDDSVTGSELSPLVKACMLSSNGFQNISRCKEKDLDDTCMLHKKSESPFRETEPLVSPHQDKLMSMPVMTVDYSKTVVKEPVDTRVSCCKTKDSDIYCTLNDSNPSLCNSEAENIEPSVMKISSNSFMNVHLESKPVICDSRNLTDHSKFACEEYKQSIGSTSSASVNHFDDLYQPIGSSGIASSLQSLPPGIKVDSLTLLKCGENTSPVLDAVLKSKKSSEFLKHAGKETIVEVGSDLPDSGKGFASRENRRNNGLSGKCLQEAQEEGNSILPERRGRPEISLDERGEGGHVHTSDDSEVVFSSCDLNLTMEDSDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSEDTDSDDSSIPRNRLQSVVVVPKNSTLPMEETSPCSSRSSQSYRHYSDHWEDERLESRRHLYEEKFESIASKACPQTDKFFLHKGTEKNPEISFTQSSRKQIDNRLPELSHPQSDGVDSTSHTDVKSDPLGHPNSEETVKAKIPSRQQEELPIYSSDFEDVPNKSWQQTTFQNRPDSRLGKTELSFSSSCEIPHVDGLHSSEELRNLGWDFSQEKPSTTYQQPDSSYGACGGHKYQQNAEQYGGTRDYWQGNGYWDPRSGRPPGTGVVYDRTQGQVPDSLTDDREEEENWDQQDGSHFSDQSDKFLLSLQKDKGSVQAPEISSNSIKDTLAVNEKKDFSKNLEKNDIKDRGPLKKRRQEIESDSESDGELQDRKKVRVEVEQGETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNMLEESKVLPIIQRWSQTKTAVPPLSEGDGYSSENTSRAHTPLNTPDPSTKLSTEADTDTPKKLMFRRLKIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEELQSQQLLPQQLPECKVDSETNIEASKLPTSEPEADAEIEPKESNGTKLEEPINEETPSQDEEEGVSDVESERSQEQPDKTVDISDLATKLLDSWKDLKEVYRIPKKSQTEKENTTTERGRDAVGFRDQTPAPKTPNRSRERDPDKQTQNKEKRKRRSSLSPPSSAYERGTKRPDDRYDTPTSKKKVRIKDRNKLSTEERRKLFEQEVAQREAQKQQQQMQNLGMTSPLPYDSLGYNAPHHPFAGYPPGYPMQAYVDPSNPNAGKVLLPTPSMDPVCSPAPYDHAQPLVGHSTEPLSAPPPVPVVPHVAAPVEVSSSQYVAQSDGVVHQDSSVAVLPVPAPGPVQGQNYSVWDSNQQSVSVQQQYSPAQSQATIYYQGQTCPTVYGVTSPYSQTTPPIVQSYAQPSLQYIQGQQIFTAHPQGVVVQPAAAVTTIVAPGQPQPLQPSEMVVTNNLLDLPPPSPPKPKTIVLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYDENPMKASKKPKTAEADTSSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVYKPKEDTELE
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Organism
Homo sapiens, Human
Protein Classification
Epigenetic regulator
>
Writer
>
Protein methyltransferase
>
SET domain
Function
Histone methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using dimethylated 'Lys-36' (H3K36me2) as substrate (PubMed:16118227, PubMed:19141475, PubMed:21526191, PubMed:21792193, PubMed:23043551, PubMed:27474439). It is capable of trimethylating unmethylated H3K36 (H3K36me0) in vitro (PubMed:19332550). Represents the main enzyme generating H3K36me3, a specific tag for epigenetic transcriptional activation (By similarity). Plays a role in chromatin structure modulation during elongation by coordinating recruitment of the FACT complex and by interacting with hyperphosphorylated POLR2A (PubMed:23325844). Acts as a key regulator of DNA mismatch repair in G1 and early S phase by generating H3K36me3, a mark required to recruit MSH6 subunit of the MutS alpha complex: early recruitment of the MutS alpha complex to chromatin to be replicated allows a quick identification of mismatch DNA to initiate the mismatch repair reaction (PubMed:23622243). Required for DNA double-strand break repair in response to DNA damage: acts by mediating formation of H3K36me3, promoting recruitment of RAD51 and DNA repair via homologous recombination (HR) (PubMed:24843002). Acts as a tumor suppressor (PubMed:24509477). H3K36me3 also plays an essential role in the maintenance of a heterochromatic state, by recruiting DNA methyltransferase DNMT3A (PubMed:27317772). H3K36me3 is also enhanced in intron-containing genes, suggesting that SETD2 recruitment is enhanced by splicing and that splicing is coupled to recruitment of elongating RNA polymerase (PubMed:21792193). Required during angiogenesis (By similarity). Required for endoderm development by promoting embryonic stem cell differentiation toward endoderm: acts by mediating formation of H3K36me3 in distal promoter regions of FGFR3, leading to regulate transcription initiation of FGFR3 (By similarity). In addition to histones, also mediates methylation of other proteins, such as tubulins and STAT1 (PubMed:27518565, PubMed:28753426). Trimethylates 'Lys-40' of alpha-tubulins such as TUBA1B (alpha-TubK40me3); alpha-TubK40me3 is required for normal mitosis and cytokinesis and may be a specific tag in cytoskeletal remodeling (PubMed:27518565). Involved in interferon-alpha-induced antiviral defense by mediating both monomethylation of STAT1 at 'Lys-525' and catalyzing H3K36me3 on promoters of some interferon-stimulated genes (ISGs) to activate gene transcription (PubMed:28753426).
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Uniprot ID
Primary ID:
Q9BYW2

Secondarily ID:
O75397
O75405
Q17RW8
Q5BKS9
Q5QGN2
Q69YI5
Q6IN64
Q6ZN53
Q6ZS25
Q8N3R0
Q8TCN0
Q9C0D1
Q9H696
Q9NZW9
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Ensembl ID
ENSG00000181555
HGNC ID
HGNC:18420
Subcellular Location
Nucleus
Chromosome
Map of Molecular Bioactivity Related to the Protein
Map of Molecular Bioactivity Related to the Protein

Protein
Cell Line
Compound

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Protein
Cell Line ID: CL000068 , A-549
Compound ID Compound Name Compound Formula
CP0966272
N-[(1R,3S)-3-[(3aS,6aS)-4-acetyl-2,3,3a,5,6,6a-hexahydropyrrolo[3,2-b]pyrrol-1-yl]cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
   Show/Hide
C24H31FN4O2
 1
1
IC50 = 5 nM
   TI
   LI
   LO
   TS
CP0970274
N-[(1R,3S)-3-[(8aS)-6-oxo-1,3,4,7,8,8a-hexahydropyrrolo[1,2-a]pyrazin-2-yl]cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
   Show/Hide
C23H29FN4O2
 1
1
IC50 = 11 nM
   TI
   LI
   LO
   TS
CP0953005
N-[(1R,3S)-3-[(3aS,6aS)-1-acetyl-2,3,3a,4,6,6a-hexahydropyrrolo[2,3-c]pyrrol-5-yl]cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C24H31FN4O2
 1
1
IC50 = 14 nM
   TI
   LI
   LO
   TS
CP0964776
4-fluoro-7-methyl-N-((1R,3S)-3-((S)-3-(N-methylmethylsulfonamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C22H31FN4O3S
 2
1
IC50 = 20 nM
   TI
   LI
   LO
   TS
2
IC50 = 23 nM
   TI
   LI
   LO
   TS
CP0967445
4-fluoro-N-(3-fluoro-5-(3-(N-methylacetamido)pyrrolidin-1-yl)phenyl)-7-methyl-1H-indole-2-carboxamide
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C23H24F2N4O2
 1
1
IC50 = 29 nM
   TI
   LI
   LO
   TS
CP0578575
EZM-0414
   Show/Hide
C22H29FN4O2
 1
1
IC50 = 31 nM
   TI
   LI
   LO
   TS
CP0578225
N-[3-(4-acetylpiperazin-1-yl)-5-fluorophenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H22F2N4O2
 1
1
IC50 = 41 nM
   TI
   LI
   LO
   TS
CP0769272
4-fluoro-7-methyl-N-((1R,3S)-3-((R)-3-(N-methylmethylsulfonamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C24H37FN4O3S
 1
1
IC50 = 64 nM
   TI
   LI
   LO
   TS
CP0969976
4-fluoro-7-methyl-N-((1R,3S)-3-((R)-3-(N-methylacetamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C23H31FN4O2
 1
1
IC50 = 74 nM
   TI
   LI
   LO
   TS
CP0969135
4-fluoro-7-methyl-N-(3-(3-(N-methylacetamido)pyrrolidin-1-yl)phenyl)-1H-indole-2-carboxamide
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C23H25FN4O2
 1
1
IC50 = 93 nM
   TI
   LI
   LO
   TS
CP0969975
4-fluoro-7-methyl-N-((1R,3S)-3-((S)-3-(N-methylacetamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C23H31FN4O2
 1
1
IC50 = 127 nM
   TI
   LI
   LO
   TS
CP0579810
N-[3-(4-acetylpiperazin-1-yl)phenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H23FN4O2
 1
1
IC50 = 134 nM
   TI
   LI
   LO
   TS
CP0950353
4-fluoro-7-methyl-N-((1R,3S)-3-(4-(methylsulfonyl)piperazin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C21H29FN4O3S
 1
1
IC50 = 162 nM
   TI
   LI
   LO
   TS
CP0576300
N-[3-[4-(dimethylamino)piperidin-1-yl]-5-fluorophenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C23H26F2N4O
 1
1
IC50 = 175 nM
   TI
   LI
   LO
   TS
CP0578688
N-[3-[4-(dimethylamino)piperidin-1-yl]phenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C23H27FN4O
 1
1
IC50 = 235 nM
   TI
   LI
   LO
   TS
CP0969255
4-fluoro-7-methyl-N-((1R,3S)-3-(pyridin-4-yl)cyclohexyl)-1H-indole-2-carboxamide
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C21H22FN3O
 1
1
IC50 = 257 nM
   TI
   LI
   LO
   TS
CP0826362
4-fluoro-7-methyl-N-((1R,3S)-3-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C21H27FN4O2
 1
1
IC50 = 340 nM
   TI
   LI
   LO
   TS
CP0552448
N-[3-[4-(dimethylamino)piperidin-1-yl]-5-methylphenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C24H29FN4O
 1
1
IC50 = 379 nM
   TI
   LI
   LO
   TS
CP0542623
N-[3-chloro-5-[4-(dimethylamino)piperidin-1-yl]phenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C23H26ClFN4O
 1
1
IC50 = 384 nM
   TI
   LI
   LO
   TS
CP0578689
4-fluoro-7-methyl-N-(3-morpholin-4-ylphenyl)-1H-indole-2-carboxamide
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C20H20FN3O2
 1
1
IC50 = 397 nM
   TI
   LI
   LO
   TS
CP0968662
4-fluoro-7-methyl-N-((1R,3S)-3-morpholinocyclohexyl)-1H-indole-2-carboxamide
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C20H26FN3O2
 1
1
IC50 = 449 nM
   TI
   LI
   LO
   TS
CP0578735
4-fluoro-7-methyl-N-[3-(4-methylpiperazin-1-yl)phenyl]-1H-indole-2-carboxamide
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C21H23FN4O
 1
1
IC50 = 540 nM
   TI
   LI
   LO
   TS
CP0569468
7-methyl-N-(3-morpholin-4-ylphenyl)-1H-indole-2-carboxamide
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C20H21N3O2
 1
1
IC50 = 2040 nM
   TI
   LI
   LO
   TS
CP0970222
N-[(1S,3R)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H29FN4O2
 1
1
IC50 > 2000 nM
   TI
   LI
   LO
   TS
CP0970486
N-[(1S,3S)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H29FN4O2
 1
1
IC50 > 2000 nM
   TI
   LI
   LO
   TS
CP0970646
N-[(1R,3R)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H29FN4O2
 1
1
IC50 > 2000 nM
   TI
   LI
   LO
   TS
Biochemical Assays
Compound ID Compound Name Compound Formula
CP0576300
N-[3-[4-(dimethylamino)piperidin-1-yl]-5-fluorophenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C23H26F2N4O
 1
1 IC50 = 3 nM
CP0967445
4-fluoro-N-(3-fluoro-5-(3-(N-methylacetamido)pyrrolidin-1-yl)phenyl)-7-methyl-1H-indole-2-carboxamide
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C23H24F2N4O2
 1
1 IC50 = 7 nM
CP0542623
N-[3-chloro-5-[4-(dimethylamino)piperidin-1-yl]phenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C23H26ClFN4O
 1
1 IC50 = 8 nM
CP0964776
4-fluoro-7-methyl-N-((1R,3S)-3-((S)-3-(N-methylmethylsulfonamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
   Show/Hide
C22H31FN4O3S
 1
1 IC50 = 8 nM
CP0966272
N-[(1R,3S)-3-[(3aS,6aS)-4-acetyl-2,3,3a,5,6,6a-hexahydropyrrolo[3,2-b]pyrrol-1-yl]cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C24H31FN4O2
 1
1 IC50 = 9 nM
CP0953005
N-[(1R,3S)-3-[(3aS,6aS)-1-acetyl-2,3,3a,4,6,6a-hexahydropyrrolo[2,3-c]pyrrol-5-yl]cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C24H31FN4O2
 1
1 IC50 = 11 nM
CP0769272
4-fluoro-7-methyl-N-((1R,3S)-3-((R)-3-(N-methylmethylsulfonamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
   Show/Hide
C24H37FN4O3S
 1
1 IC50 = 12 nM
CP0969135
4-fluoro-7-methyl-N-(3-(3-(N-methylacetamido)pyrrolidin-1-yl)phenyl)-1H-indole-2-carboxamide
   Show/Hide
C23H25FN4O2
 1
1 IC50 = 12 nM
CP0969255
4-fluoro-7-methyl-N-((1R,3S)-3-(pyridin-4-yl)cyclohexyl)-1H-indole-2-carboxamide
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C21H22FN3O
 1
1 IC50 = 12 nM
CP0578225
N-[3-(4-acetylpiperazin-1-yl)-5-fluorophenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H22F2N4O2
 1
1 IC50 = 12 nM
CP0969976
4-fluoro-7-methyl-N-((1R,3S)-3-((R)-3-(N-methylacetamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C23H31FN4O2
 1
1 IC50 = 15 nM
CP0970274
N-[(1R,3S)-3-[(8aS)-6-oxo-1,3,4,7,8,8a-hexahydropyrrolo[1,2-a]pyrazin-2-yl]cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
   Show/Hide
C23H29FN4O2
 1
1 IC50 = 15 nM
CP0552448
N-[3-[4-(dimethylamino)piperidin-1-yl]-5-methylphenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C24H29FN4O
 1
1 IC50 = 17 nM
CP0578688
N-[3-[4-(dimethylamino)piperidin-1-yl]phenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C23H27FN4O
 1
1 IC50 = 18 nM
CP0578575
EZM-0414
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C22H29FN4O2
 1
1 IC50 = 18 nM
CP0969975
4-fluoro-7-methyl-N-((1R,3S)-3-((S)-3-(N-methylacetamido)pyrrolidin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
   Show/Hide
C23H31FN4O2
 1
1 IC50 = 23 nM
CP0579810
N-[3-(4-acetylpiperazin-1-yl)phenyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H23FN4O2
 1
1 IC50 = 27 nM
CP0950353
4-fluoro-7-methyl-N-((1R,3S)-3-(4-(methylsulfonyl)piperazin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
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C21H29FN4O3S
 1
1 IC50 = 56 nM
CP0578735
4-fluoro-7-methyl-N-[3-(4-methylpiperazin-1-yl)phenyl]-1H-indole-2-carboxamide
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C21H23FN4O
 1
1 IC50 = 66 nM
CP0578689
4-fluoro-7-methyl-N-(3-morpholin-4-ylphenyl)-1H-indole-2-carboxamide
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C20H20FN3O2
 1
1 IC50 = 101 nM
CP0826362
4-fluoro-7-methyl-N-((1R,3S)-3-(4-methyl-3-oxopiperazin-1-yl)cyclohexyl)-1H-indole-2-carboxamide
   Show/Hide
C21H27FN4O2
 1
1 IC50 = 118 nM
CP0968662
4-fluoro-7-methyl-N-((1R,3S)-3-morpholinocyclohexyl)-1H-indole-2-carboxamide
   Show/Hide
C20H26FN3O2
 1
1 IC50 = 147 nM
CP0569468
7-methyl-N-(3-morpholin-4-ylphenyl)-1H-indole-2-carboxamide
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C20H21N3O2
 1
1 IC50 = 818 nM
CP0970646
N-[(1R,3R)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H29FN4O2
 1
1 IC50 = 1240 nM
CP0970222
N-[(1S,3R)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H29FN4O2
 1
1 IC50 > 10000 nM
CP0970486
N-[(1S,3S)-3-(4-acetylpiperazin-1-yl)cyclohexyl]-4-fluoro-7-methyl-1H-indole-2-carboxamide
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C22H29FN4O2
 1
1 IC50 > 10000 nM
Clinical Information about the Protein
Target 1 ( Lysine N-methyltransferase 3A (SETD2) )
Target Type Literature-reported Target