General Information of the Compound
Compound ID
CP0579557
Compound Name
(2S)-6-methyl-N-[(1S)-7-oxo-1-[5-(4-pyrazin-2-ylphenyl)-1H-imidazol-2-yl]nonyl]-6-azaspiro[2.5]octane-2-carboxamide
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Structure
Formula
C31H40N6O2
Molecular Weight
528.701
Canonical SMILES
CCC(=O)CCCCC[C@H](NC(=O)[C@H]1CC11CCN(C)CC1)c1ncc([nH]1)-c1ccc(cc1)-c1cnccn1
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InChI
InChI=1S/C31H40N6O2/c1-3-24(38)7-5-4-6-8-26(36-30(39)25-19-31(25)13-17-37(2)18-14-31)29-34-21-28(35-29)23-11-9-22(10-12-23)27-20-32-15-16-33-27/h9-12,15-16,20-21,25-26H,3-8,13-14,17-19H2,1-2H3,(H,34,35)(H,36,39)/t25-,26+/m1/s1
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InChIKey
DDCDBKDXBVPBNH-FTJBHMTQSA-N
Physicochemical Property
logP
5.3525
Rotatable Bonds
12
Heavy Atom Count
39
Polar Areas
103.87
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Complexity
39

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 147338912
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00835, Histone deacetylase 2
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  1
1
IC50 = 4.1 nM
   TI
   LI
   LO
   TS
Protein ID: PT00995, Histone deacetylase 3
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000131 HEK293-F Homo sapiens (Human)  1
1
IC50 = 0.75 nM
   TI
   LI
   LO
   TS