General Information of the Compound
Compound ID
CP0566736
Compound Name
N-[4-[2-[(2S,3S,5S)-2-[[tert-butyl(dimethyl)silyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]-1,3-dithian-2-yl]phenyl]-N'-hydroxyheptanediamide
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Structure
Formula
C33H50N4O7S2Si
Molecular Weight
707.004
Canonical SMILES
Cc1cn([C@@H]2C[C@@H]([C@@H](CO[Si](C)(C)C(C)(C)C)O2)C2(SCCCS2)c2ccc(NC(=O)CCCCCC(=O)NO)cc2)c(=O)[nH]c1=O
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InChI
InChI=1S/C33H50N4O7S2Si/c1-22-20-37(31(41)35-30(22)40)29-19-25(26(44-29)21-43-47(5,6)32(2,3)4)33(45-17-10-18-46-33)23-13-15-24(16-14-23)34-27(38)11-8-7-9-12-28(39)36-42/h13-16,20,25-26,29,42H,7-12,17-19,21H2,1-6H3,(H,34,38)(H,36,39)(H,35,40,41)/t25-,26+,29-/m0/s1
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InChIKey
WNFFFEKXYPWSOF-HFASVGIHSA-N
Physicochemical Property
logP
5.88802
Rotatable Bonds
13
Heavy Atom Count
47
Polar Areas
151.75
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
10
Complexity
47

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 145987267
ChEMBL ID
CHEMBL4228977
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT00991, Histone deacetylase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 590 nM
   TI
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Protein ID: PT03064, Histone deacetylase 6
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000025 HEK-293T Homo sapiens (Human)  1
1
IC50 = 81 nM
   TI
   LI
   LO
   TS
Cell Viability or Cytotoxicity Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000067 HCT 116 Homo sapiens (Human)  1
1
GI50 = 14800 nM
   TI
   LI
   LO
   TS
CL000083 MCF-7 Homo sapiens (Human)  1
1
GI50 = 17800 nM
   TI
   LI
   LO
   TS