General Information of the Compound
Compound ID
CP0109512
Compound Name
[(2R)-1-[[4-[[3-(benzenesulfonylmethyl)-5-methylphenoxy]methyl]phenyl]methyl]pyrrolidin-2-yl]methanol
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Synonyms
PF 543
PF-543
sphingosine kinase 1 Inhibitor II
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Structure
Formula
C27H31NO4S
Molecular Weight
465.615
Canonical SMILES
Cc1cc(CS(=O)(=O)c2ccccc2)cc(OCc2ccc(CN3CCC[C@@H]3CO)cc2)c1
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InChI
InChI=1S/C27H31NO4S/c1-21-14-24(20-33(30,31)27-7-3-2-4-8-27)16-26(15-21)32-19-23-11-9-22(10-12-23)17-28-13-5-6-25(28)18-29/h2-4,7-12,14-16,25,29H,5-6,13,17-20H2,1H3/t25-/m1/s1
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InChIKey
NPUXORBZRBIOMQ-RUZDIDTESA-N
Physicochemical Property
logP
4.50462
Rotatable Bonds
9
Heavy Atom Count
33
Polar Areas
66.84
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Complexity
33

"RO5" indicates the cutoff set by lipinski's rule of five:

(1) Molecular weight less than 500 Dalton;

(2) xlogp less than 5;

(3) No more than 5 hbonddonor (Hydrogen Bond Donor Count);

(4) No more than 10 hbondacc (Hydrogen Bond Acceptor Count);

(5) No more than 10 rotbonds (Rotatable Bond Count).

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PubChem ID
CID: 66577038
ChEMBL ID
CHEMBL3134157
Map of Molecular Bioactivity Related to the Compound
Map of Molecular Bioactivity Related to the Compound

Compound
Cell Line
Protein

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Compound
Protein ID: PT01766, Sphingosine kinase 1
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000980 MDA-1483 Homo sapiens (Human)  1
1
IC50 = 0.8 nM
   TI
   LI
   LO
   TS
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  3
1
IC50 = 2 nM
   TI
   LI
   LO
   TS
2
IC50 = 2.7 nM
   TI
   LI
   LO
   TS
3
Ki = 3.6 nM
   TI
   LI
   LO
   TS
CL000006 HEK293 Homo sapiens (Human)  1
1
IC50 = 28 nM
   TI
   LI
   LO
   TS
CL000012 Sf21 Spodoptera frugiperda (Fall armyworm)  1
1
Ki = 3.6 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 2.6 nM
2 IC50 = 3 nM
3 IC50 = 20 nM
4 IC50 = 28 nM
5 IC50 = 40 nM
6 IC50 = 387 nM
7 Kd = 5 nM
8 Ki = 4 nM
Protein ID: PT01765, Sphingosine kinase 2
Cell-based Assay
Cell Line ID Cell Line Name Cell Line Organism
CL000013 Sf9 Spodoptera frugiperda (Fall armyworm)  1
1
IC50 > 5000 nM
   TI
   LI
   LO
   TS
Biochemical Assays
1 IC50 = 356 nM
2 IC50 = 5400 nM
3 IC50 = 17000 nM
4 IC50 > 5000 nM
5 IC50 > 10000 nM
6 Ki = 3.6 nM
Clinical Information about the Compound
Drug 1 ( PF-543 )
Drug Name PF-543
Target(s)
Sphingosine kinase 1 (SPHK1)
Inhibitor