General Information of the Protein
Protein ID
PT07046
Protein Name
Serine palmitoyltransferase 2
Secondarily
Protein Name
Long chain base biosynthesis protein 2
Long chain base biosynthesis protein 2a
Serine-palmitoyl-CoA transferase 2
Gene Name
SPTLC2
Secondarily
Gene Name
KIAA0526
LCB2
Sequence
MRPEPGGCCCRRTVRANGCVANGEVRNGYVRSSAAAAAAAAAGQIHHVTQNGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED
    Show/Hide
Organism
Homo sapiens, Human
Protein Classification
Enzyme
>
Transferase
Function
Component of the serine palmitoyltransferase multisubunit enzyme (SPT) that catalyzes the initial and rate-limiting step in sphingolipid biosynthesis by condensing L-serine and activated acyl-CoA (most commonly palmitoyl-CoA) to form long-chain bases (PubMed:19648650, PubMed:19416851, PubMed:20920666, PubMed:20504773). The SPT complex is composed of SPTLC1, SPTLC2 or SPTLC3 and SPTSSA or SPTSSB. Within this complex, the heterodimer consisting of SPTLC1 and SPTLC2/SPTLC3 forms the catalytic core (PubMed:19416851). The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference (PubMed:19416851). The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates, with a slight preference for C14-CoA (PubMed:19648650, PubMed:19416851). The SPTLC1-SPTLC2-SPTSSB complex shows a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme displays an ability to use a broader range of acyl-CoAs, without apparent preference (PubMed:19648650, PubMed:19416851). Crucial for adipogenesis (By similarity).
    Show/Hide
Uniprot ID
Primary ID:
O15270

Secondarily ID:
Q16685
    Show/Hide
HGNC ID
HGNC:11278
Subcellular Location
Endoplasmic reticulum membrane
Map of Molecular Bioactivity Related to the Protein
Map of Molecular Bioactivity Related to the Protein

Protein
Cell Line
Compound

Bioactivity Value:

<= 0.1 μM
> 0.1 μM and <= 10 μM
> 10 μM
Imprecise Activity
Table of Molecular Bioactivities Related to the Protein
Cell Line ID: CL000742 , FreeStyle 293-F
Compound ID Compound Name Compound Formula
CP0182768
CHEBI:582124
   Show/Hide
C21H39NO6
 1
1
IC50 = 0.13 nM
   TI
   LI
   LO
   TS
CP0521562
2-chloro-N-[(3S,4R)-1-(3,4-dimethoxybenzoyl)-3-phenylpiperidin-4-yl]benzamide
   Show/Hide
C27H27ClN2O4
 1
1
IC50 = 0.36 nM
   TI
   LI
   LO
   TS
CP0521561
N-[(7S)-4-(5,6-dimethoxypyridine-3-carbonyl)-1-propan-2-yl-6,7-dihydro-5H-pyrazolo[4,3-b]pyridin-7-yl]-2-(trifluoromethoxy)benzamide
   Show/Hide
C25H26F3N5O5
 1
1
IC50 = 0.54 nM
   TI
   LI
   LO
   TS
CP0550422
N-[(3S,4R)-1-(8-chloroquinoxaline-6-carbonyl)-3-phenylpiperidin-4-yl]-2-methyl-5-(trifluoromethyl)pyrazole-3-carboxamide
   Show/Hide
C26H22ClF3N6O2
 1
1
IC50 = 0.71 nM
   TI
   LI
   LO
   TS
CP0469391
N-[4-(5,6-dimethoxypyridine-3-carbonyl)-1-propan-2-yl-6,7-dihydro-5H-pyrazolo[4,3-b]pyridin-7-yl]-2-(trifluoromethoxy)benzamide
   Show/Hide
C25H26F3N5O5
 1
1
IC50 = 1.2 nM
   TI
   LI
   LO
   TS
CP0513244
2-chloro-N-[1-(3,4-dimethoxybenzoyl)-3-phenylpiperidin-4-yl]benzamide
   Show/Hide
C27H27ClN2O4
 1
1
IC50 = 1.2 nM
   TI
   LI
   LO
   TS
CP0456047
2-chloro-N-[(3R,4R)-1-(3,4-dimethoxybenzoyl)-3-phenylpiperidin-4-yl]benzamide
   Show/Hide
C27H27ClN2O4
 1
1
IC50 = 5 nM
   TI
   LI
   LO
   TS
CP0521560
2-chloro-N-[7-chloro-1-(3,4-dimethoxybenzoyl)-3,4-dihydro-2H-quinolin-4-yl]benzamide
   Show/Hide
C25H22Cl2N2O4
 1
1
IC50 = 5.1 nM
   TI
   LI
   LO
   TS
CP0575023
2-chloro-N-[4-(3,4-dimethoxybenzoyl)-1-methyl-6,7-dihydro-5H-pyrazolo[4,3-b]pyridin-7-yl]benzamide
   Show/Hide
C23H23ClN4O4
 1
1
IC50 = 7.7 nM
   TI
   LI
   LO
   TS
CP0550421
2-chloro-N-[(3R,4S)-1-(3,4-dimethoxybenzoyl)-3-phenylpiperidin-4-yl]benzamide
   Show/Hide
C27H27ClN2O4
 1
1
IC50 = 220 nM
   TI
   LI
   LO
   TS
CP0567274
[7-chloro-4-(4-chloroanilino)-3,4-dihydro-2H-quinolin-1-yl]-(3,4-dimethoxyphenyl)methanone
   Show/Hide
C24H22Cl2N2O3
 1
1
IC50 = 650 nM
   TI
   LI
   LO
   TS
CP0575024
N-[(7R)-4-(5,6-dimethoxypyridine-3-carbonyl)-1-propan-2-yl-6,7-dihydro-5H-pyrazolo[4,3-b]pyridin-7-yl]-2-(trifluoromethoxy)benzamide
   Show/Hide
C25H26F3N5O5
 1
1
IC50 = 2800 nM
   TI
   LI
   LO
   TS
CP0469392
2-chloro-N-[(3S,4S)-1-(3,4-dimethoxybenzoyl)-3-phenylpiperidin-4-yl]benzamide
   Show/Hide
C27H27ClN2O4
 1
1
IC50 = 3000 nM
   TI
   LI
   LO
   TS